This non-exhaustive list of freely available research tools can assist you in your research projects and help you make better-informed decisions
ANNOVAR is a software tool to utilize up-to-date information to functionally annotate genetic variants detected from diverse genomes.
Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data.
cBioPortal for Cancer Genomics
The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets.
The Catalogue of somatic mutations in cancer (COSMIC) is designed to store and display somatic mutation information and related details and contains information relating to human cancers.
The Database for Annotation, Visualization and Integrated Discovery (DAVID) provides a comprehensive set of functional annotation tools for investigators to understand biological meaning behind large lists of genes.
The Drug-Gene Interaction Database (DGIdb) is a tool to help search for drug-gene interactions by gene name and find genes in druggable gene categories.
Gene Set Enrichment Analysis (GSEA)
GSEA is a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states (e.g., phenotypes).
Molecular Signatures Database (MSigDB)
MSigDB is a collection of annotated gene sets for use with GSEA software.
The Oncomine Research Edition provides more than 700 datasets and over 85,000 samples to help improve the ease and efficiency of discovery.
Oncotator is a web application for annotating human genomic point mutations and indels with data relevant to cancer researchers.